Ontological Tools in Anaerobic Fermentation Technologies: Bioinformation Database Applications | Journal of Engineering Sciences

Ontological Tools in Anaerobic Fermentation Technologies: Bioinformation Database Applications

Author(s): Shulipa Ye. O.1, Chernysh Ye. Yu.1*,
Plyatsuk L. D.1, Fukui M.2

Affiliation(s): 
1 Sumy State University, 2 Rymskogo-Korsakova St., 40007 Sumy, Ukraine;
2 Institute of Low Temperature Science, Hokkaido University, 8 Chome Kita St., 060-0819 Hokkaido, Japan

*Corresponding Author’s Address: e.chernish@ssu.edu.ua

Issue: Volume 7, Issue 1 (2020)

Dates:
Paper received: January 17, 2020
The final version of the paper received: May 4, 2020
Paper accepted online: May 18, 2020

Citation:
Shulipa, Ye. O., Chernysh, Ye. Yu., Plyatsuk, L. D., Fukui, M. (2020). Ontological tools in anaerobic fermentation technologies: Bioinformation database applications. Journal of Engineering Sciences, Vol. 7(1), pp. H1–H8, doi: 10.21272/jes.2020.7(1).h1

DOI: 10.21272/jes.2020.7(1).h1

Research Area:  CHEMICAL ENGINEERING: Environmental Protection

Abstract. An important direction of forming an effective system for recycling waste of various genesis is to optimize the processes of their treatment using the latest information resources. The paper deals with theoretical studies of directions for the systematization and optimization of anaerobic waste processing technologies using ontological tools based on information resources. Significant scientific support to biochemical research is provided by electronic bioinformatics databases such as KEGG, BacDive, and EAWAG-BBD, etc., which provide access to a collection of graphical representations and text descriptions of metabolic or signal pathways, schemes of regulation of biological processes, information about the organism. They cover various aspects of bacterial and archaic biodiversity, information on microbial biocatalytic reactions and biodegradation pathways of mainly xenobiotic chemical compounds. Also, in the course of work based on analytical data of electronic databases of bioinformatics, in particular, the interaction of necessary ecological and trophic groups of microorganisms, biochemical simulation of anaerobic waste processing with biofuel production was carried out.

Keywords: waste disposal, bioinformatics database, anaerobic fermentation, biofuel.

References:

  1. Shapovalov, E. B. (2019). Improving the Biotechnology of Anaerobic Fermentation of Chicken Manure with Reduced Runoff. D.Sc. Thesis. Kyiv, Ukraine.
  2. Strizhak, O. E., Gorborkov, V. V., Franchuk, O. V. (2014). Ontology of the problem of choice and its application in the analysis of limnological systems. Ecological Safety and in the Use of Labor, Vol. 15, pp. 172–183.
  3. Velychko, V. Y., Popova, M. A., Prykhodniuk, V. V., Strizhak, O. E. (2017). Todos is an IT platform for creating transdisciplinary information environments. Weapons Systems and Military Equipment, Vol. 1(49), pp. 10–19.
  4. Golub, N. B., Drapoy, D. I. (2016). Hydrogen production during anaerobic fermentation of corn and sunflower waste. Scientific News of NTUU “KPI”, Vol. 3, pp. 13–19.
  5. Kireyeva V. (2010). Microbial transformation of vegetative plant mass residues with obtaining feedstuff for ruminants. Journal of Don State Technical University, Vol. 10(4), pp. 520–525.
  6. Prikhodko, V. Y., Safranov, T. A., Shanina, T. P. (2019). Evaluation of the involvement of biogenic elements in the natural cycle when composting the organic component of municipal solid waste. International Scientific Ecological Conference “Waste, Causes of their Formation and Prospects for Use”, pp. 566–568.
  7. About the EAWAG Biocatalysis / Biodegradation Database: Biocatalysis / Biodegradation Database: Website, URL: http://eawag-bbd.ethz.ch/aboutBBD.html.
  8. Palacios Jaramillo, P. A., Snoeyenbos-West, O., Loscher, C., Thamdrup, B., Rotaru, A.-E. (2019). Baltic Methanosarcina and Clostridium compete for electrons from metallic iron. BioRxiv, 530386, doi: 10.1101/530386.
  9. Rotaru A.-E., Malla Shrestha P., Liu F., Markovaite B., Chen Sh., Nevin K. P., Lovley D. R. (2014). Direct Interspecies Electron Transfer between Geobacter metallireducens and Methanosarcina barkers. Applied and Environmental Microbiology, Vol. 80(15), pp. 4599–4605, doi: 10.1128/AEM.00895-14.
  10. Ding C., He J. (2016). Handbook of Biofuels Production. Processes and Technologies (2nd ed.). Boston, Woodhead Publishing.
  11. Markov, S. A., Protasov, E. S., Bybin, V. A., Stom, D. I. (2013). Hydrogen production by microorganisms and microbial fuel cells using wastewater and waste products. International Scientific Journal for Alternative Energy and Ecology, Vol. 01/2, pp.108−116.
  12. Kalyuzhny S. V. (2006). Biotechnological hydrogen production: fundamental principles and limiting factors. Catalysis in Industry, Vol. 6, pp. 33−41.
  13. Cardoso V., Betania, B. R., Felipe, T. M. Silva, Santos, J. G., Batista, F. R. X., Juliana S. (2014). Hydrogen production by dark fermentation. Ferreira Schematic Engineeringtransactions, Vol. 38, pp. 481-486.
  14. Fukui M., Jung-In S., Yoshikuni U. (2000). In situ substrates for sulfidogens and methanogens in municipal anaerobic sewage digesters with different levels of sulfate. Res., Vol. 34(5), pp. 1515–1524.

Full Text

 


© 2014-2019 Sumy State University.
Scientific journal "Journal of Engineering Sciences"
ISSN 2312-2498 (Print), ISSN 2414-9381 (Online).
All rights reserved.